Publications of Aida Andrades Valtueña

Andrades Valtueña, A.; Neumann, G.; Spyrou, M. A.; Musralina, L.; Aron, F.; Beisenov, A.; Belinskiy, A. B.; Bos, K. I.; Buzhilova, A.; Conrad, M. et al.; Djansugurova, L. B.; Dobes, M.; Ernee, M.; Fernandez-Eraso, J.; Frohlich, B.; Furmanek, M.; Hałuszko, A.; Hansen, S.; Harney, E.; Hiss, A. N.; Hübner, A.; Key, F. M.; Khussainova, E.; Kitov, E.; Kitova, A. O.; Knipper, C.; Kühnert, D.; Lalueza-Fox, C.; Littleton, J.; Massy, K.; Mittnik, A.; Mujika-Alustiza, J. A.; Olalde, I.; Papac, L.; Penske, S. E.; Peska, J.; Pinhasi, R.; Reich, D.; Reinhold, S.; Stahl, R.; Stäuble, H.; Tukhbatova, R. I.; Vasilyev, S.; Veselovskaya, E.; Warinner, C.; Stockhammer, P. W.; Haak, W.; Krause, J.; Herbig, A.: Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague. Proceedings of the National Academy of Sciences of the United States of America 119 (17), e2116722119, pp. 1 - 11 (2022)

Wu, X.; Ning, C.; Key, F. M.; Andrades Valtueña, A.; Lankapalli, A. K.; Gao, S.; Yang, X.; Zhang, F.; Liu, L.; Nie, Z. et al.; Ma, J.; Krause, J.; Herbig, A.; Cui, Y.: A 3,000-year-old, basal S. enterica lineage from Bronze Age Xinjiang suggests spread along the Proto-Silk Road. PLoS Pathogens 17 (9), 1009886, pp. 1 - 19 (2021)

Fellows Yates, J. A.; Lamnidis, T. C.; Borry, M.; Andrades Valtueña, A.; Fagernäs, Z.; Clayton, S.; Garcia, M. U.; Neukamm, J.; Peltzer, A.: Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager. PeerJ, e10947 (2021)

Fellows Yates, J. A.; Andrades Valtueña, A.; Vågene, A. J.; Cribdon, B.; Velsko, I. M.; Borry, M.; Bravo-López, M. J.; Fernandez-Guerra, A.; Green, E. J.; Ramachandran, S. L. et al.; Heintzman, P. D.; Spyrou, M. A.; Hübner, A.; Gancz, A. S.; Hider, J.; Allshouse, A. F.; Warinner, C.: Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data 8 (1), 31, pp. 1 - 8 (2021)

Spyrou, M. A.; Keller, M.; Tukhbatova, R. I.; Scheib, C. L.; Nelson, E. A.; Andrades Valtueña, A.; Neumann, G.; Walker, D.; Alterauge, A.; Carty, N. et al.; Cessford, C.; Fetz, H.; Gourvennec, M.; Hartle, R.; Henderson, M.; von Heyking, K.; Inskip, S. A.; Kacki, S.; Key, F. M.; Knox, E. L.; Later, C.; Maheshwari-Aplin, P.; Peters, J.; Robb, J. E.; Schreiber, J.; Kivisild, T.; Castex, D.; Lösch, S.; Harbeck, M.; Herbig, A.; Bos, K. I.; Krause, J.: Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. Nature Communications 10 (1), 4470 (2019)

Bos, K. I.; Kühnert, D.; Herbig, A.; Esquivel Gomez, L. R.; Andrades Valtueña, A.; Barquera Lozano, R. J.; Giffin, K.; Lankapalli, A. K.; Nelson, E. A.; Sabin, S. et al.; Spyrou, M. A.; Krause, J.: Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology 73 (1), pp. 639 - 666 (2019)

Spyrou, M. A.; Tukhbatova, R. I.; Wang, C.-C.; Andrades Valtueña, A.; Lankapalli, A. K.; Kondrashin, V. V.; Tsybin, V. A.; Khokhlov, A.; Kühnert, D.; Herbig, A. et al.; Bos, K. I.; Krause, J.: Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications 9, 2234 (2018)

Vågene, Å. J.; Herbig, A.; Campana, M. G.; García, R.; M., N.; Warinner, C.; Sabin, S.; Spyrou, M. A.; Andrades Valtueña, A.; Huson, D. et al.; Tuross, N.; Bos, K. I.; Krause, J.: Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution 2 (3), pp. 520 - 528 (2018)

Mittnik, A.; Wang, C.-C.; Pfrengle, S.; Daubaras, M.; Zariņa, G.; Hallgren, F.; Allmäe, R.; Khartanovich, V.; Moiseyev, V.; Tõrv, M. et al.; Furtwängler, A.; Andrades Valtueña, A.; Feldman, M.; Economou, C.; Oinonen, M.; Vasks, A.; Balanovska, E.; Reich, D.; Jankauskas, R.; Haak, W.; Schiffels, S.; Krause, J.: The genetic prehistory of the Baltic Sea region. Nature Communications 9, 442 (2018)

Andrades Valtueña, A.; Mittnik, A.; Key, F. M.; Haak, W.; Allmäe, R.; Belinskij, A.; Daubaras, M.; Feldman, M.; Jankauskas, R.; Janković, I. et al.; Massy, K.; Novak, M.; Pfrengle, S.; Reinhold, S.; Šlaus, M.; Spyrou, M. A.; Szécsényi-Nagy, A.; Tõrv, M.; Hansen, S.; Bos, K. I.; Stockhammer, P. W.; Herbig, A.; Krause, J.: The Stone Age plague and its persistence in Eurasia. Current Biology 27 (23), pp. 3683 - 3691 (2017)

Andrades Valtueña, A.: Beyond phylogenies: advancing analytical approaches for the field of ancient pathogenomics. Dissertation, 205 pp., Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften, Jena (2021)

Mittnik, A.; Wang, C.-C.; Pfrengle, S.; Daubaras, M.; Zariņa, G.; Hallgren, F.; Allmäe, R.; Khartanovich, V.; Moiseyev, V.; Furtwängler, A. et al.; Andrades Valtueña, A.; Feldman, M.; Economou, C.; Oinonen, M.; Vasks, A.; Tõrv, M.; Balanovsky, O.; Reich, D.; Jankauskas, R.; Haak, W.; Schiffels, S.; Krause, J.: The genetic history of Northern Europe. bioRxiv, 113241 (2017), 26 pp.